PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485204
Common NameARALYDRAFT_485204
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 1358aa    MW: 152229 Da    PI: 7.2982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485204genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004812401265123
               EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
               y+C    C++sFs+  +L+ H r+ +
   485204 1240 YQCDmeGCTMSFSSEKQLTLHKRNiC 1265
               99********************9877 PP

2zf-C2H215.16.7e-0512651287323
               ET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
               Cp   Cgk F ++ +L++H+r+H
   485204 1265 CPvkGCGKNFFSHKYLVQHQRVH 1287
               9999*****************99 PP

3zf-C2H2120.0006513231349123
               EEET..TTTEEESSHHHHHHHHHH..T CS
  zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
               y+C    Cg++F+  s++ rH r+  H
   485204 1323 YVCAepGCGQTFRFVSDFSRHKRKtgH 1349
               899999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005457.6E-181960IPR003349JmjN domain
PROSITE profilePS5118313.7442061IPR003349JmjN domain
PfamPF023756.3E-142154IPR003349JmjN domain
SMARTSM005586.2E-53200369IPR003347JmjC domain
PROSITE profilePS5118433.99203369IPR003347JmjC domain
SuperFamilySSF511978.79E-28216387No hitNo description
PfamPF023731.4E-37233352IPR003347JmjC domain
SMARTSM003557.512401262IPR015880Zinc finger, C2H2-like
SMARTSM003550.0112631287IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.17312631292IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-612651291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012651287IPR007087Zinc finger, C2H2
SuperFamilySSF576673.82E-1012791321No hitNo description
Gene3DG3DSA:3.30.160.609.6E-912921316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001512931317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.92812931322IPR007087Zinc finger, C2H2
PROSITE patternPS00028012951317IPR007087Zinc finger, C2H2
SuperFamilySSF576673.04E-813111345No hitNo description
Gene3DG3DSA:3.30.160.601.9E-913171346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6213231349IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03213231354IPR007087Zinc finger, C2H2
PROSITE patternPS00028013251349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1358 aa     Download sequence    Send to blast
MAVSEQSQDV FPWLKSLPVA PEFRPTLAEF QDPIAYILKI EEEASRYGIC KILPPLPPPS  60
KKTSISNLNR SLAARAAARV RDGGFGACDY DGGPTFATRQ QQIGFCPRKQ RPVQRPVWQS  120
GEEYSFGEFE FKAKNFEKNY LKKCGKKSQL SALEIETLYW RATVDKPFSV EYANDMPGSA  180
FIPLSLAAAR RRESGGEGGT VGETAWNMRA MSRAEGSLLK FMKEEIPGVT SPMVYIAMMF  240
SWFAWHVEDH DLHSLNYLHM GAGKTWYGVP KDAAVAFEEV VRVHGYGGEL NPLVTFSTLG  300
EKTTVMSPEV FVKAGIPCCR LVQNPGDFVV TFPGAYHSGF SHGFNFGEAS NIATPEWLRM  360
AKDAAIRRAA INYPPMVSHL QLLYDFALAL GSRVPTSINA KPRSSRLKDK LRSEGERLTK  420
KLFVQNIIHN NELLSSLGKG SPVALLPQSS SDISVCSDLR IGSHLITNQE NPILLKSEDL  480
SSDSVMVGLS NGLKDTVSVK EKFTSLCERS RNHLASREKD TQETLSDAER RKNDGAVALS  540
DQRLFSCVTC GVLSFDCVAI VQPKEAAARY LMSADCSFFN DWTAASGSAN LGQAARSLHP  600
QSTEKHDVNY FYNDPVQTMD HSMKTGDQRT STTSLTMAHK DNGALGLLAS AYGDSSDSEE  660
EGQKGLDVPT SEGETKKYDQ EDADGNEEAR DGRTSDFNSQ RLTSEQNRLS KGGNSSLLEI  720
ALPFIPRSDD DSCRLHVFCL EHAAEVEQQL RPFGGIHIML LCHPEYPRIE AEAKIVAEEL  780
VINHEWNDTE FRNVTREDEE TIQAALDNVE PKGGNSDWTV KLGINLSYSA ILSRSPLYSK  840
QMPYNSVIYN AFGRSSPATS SPLKPEVSGK RSSRQRKYVV GKWCGKVWMS HQVHPFLLEQ  900
DLEGEESERN CHLRGALVED VTRTGLLPCN VSRDATTMFG RKYCRKRKVR AKAVPRKKLT  960
SFKREDGVSD DTSEDHSYKQ QWRASGNEEE SYFETGNTVS GDSSNQMSDQ QLKGIRRHRG  1020
VKEFESDNEV SDRSLGEEYT VRGCAASESS MENGFQQSMY DDDDDDDDID RHPRGIPRSE  1080
RIAVFRNPVS YDSEENGIYH QRGRVSRSNR QANRMGGEYD SEENSLEEQD FCSTGKRQTR  1140
STAKRKVKIE TVRSPRDTKG RTLQEFASGK KNEELDSYME GPSTRLRVRN LKPLRAASET  1200
KPKKIGKKRS GNASFSRVAT EEDMEEDEEA ENEEEECAAY QCDMEGCTMS FSSEKQLTLH  1260
KRNICPVKGC GKNFFSHKYL VQHQRVHSDD RPLKCPWKGC KMTFKWAWSR TEHIRVHTGA  1320
RPYVCAEPGC GQTFRFVSDF SRHKRKTGHS VKKTKKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_B2e-48183587322HISTONE DEMETHYLASE JARID1C
5fwj_A2e-48183587322HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1945957KRKVRAKAVPRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6644990.0AY664499.1 Arabidopsis thaliana relative of early flowering 6 (REF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875902.10.0hypothetical protein ARALYDRAFT_485204
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLD7LRW50.0D7LRW5_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__1196__AT3G48430.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52592843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6